Building a Controlled Substance Compliance Program From the Ground Up

Doug Jorgensen

Doug Jorgensen

April 3, 2025

Introduction: Start With the End in Mind

Whether you’re opening a new practice or formalizing policies in an existing one, building a controlled substance compliance program isn’t just about meeting regulatory requirements—it’s about creating a sustainable system that protects patients, providers, and the organization.

A strong compliance program should work on autopilot, not only during an audit but every day in routine patient care.


Step 1: Define Your Compliance Goals

Before you start writing policies, clarify:

  • Regulatory Alignment – Meet DEA, state medical board, and payer requirements.
  • Risk Mitigation – Reduce the potential for diversion, misuse, and overprescribing.
  • Operational Efficiency – Make compliance steps fit naturally into daily workflows.
  • Documentation Excellence – Ensure every prescribing decision is defensible.

Step 2: Develop Core Written Policies

Your compliance manual should cover:

  1. Prescribing Criteria – Conditions under which controlled substances will be initiated, continued, or discontinued.
  2. Risk Assessment Protocols – Standardized evaluation tools for new patients.
  3. Monitoring Requirements – PMP checks, urine drug testing (UDT), pill counts, and follow-up intervals.
  4. Controlled Substance Agreements (CSAs) – Signed by patient and provider before therapy begins.
  5. Refill and Early Refill Policy – Clearly outline procedures and exceptions.
  6. Termination Procedures – Steps for safely ending the provider–patient relationship.

Step 3: Train Your Entire Team

  • Role-Specific Training – Tailor content for providers, nurses, MAs, and front desk staff.
  • Policy Familiarity – Everyone should know where policies are stored and how they apply.
  • Scenario Practice – Role-play common patient interactions, such as early refill requests or refusal to comply with UDT.

Step 4: Integrate Compliance Into Workflows

  • EHR Templates – Build PMP checkboxes, UDT result fields, and CSA status into visit notes.
  • Automated Reminders – Use software to prompt required monitoring before refills.
  • Checklists – For each high-risk patient visit, ensure all steps are completed and documented.

Step 5: Conduct Regular Internal and External Audits

  • Quarterly Chart Reviews – Randomly sample charts for compliance with policy.
  • Policy-Procedure Alignment – Verify that actual practice matches written protocols.
  • Corrective Action Plans – Address any deficiencies and retrain staff as needed.

Internal audits demonstrate an earnest commitment to compliance, while external audits communicate to regulators the seriousness with which you approach it.


Step 6: Plan for Regulatory Interactions

  • Designate a compliance officer or lead to communicate with auditors.
  • Keep a compliance binder with key documents: policies, training logs, sample monitoring reports.
  • Be ready to produce evidence quickly and professionally.

Step 7: Review and Update Annually

  • Update for changes in state and federal regulations.
  • Revise based on audit findings, near misses, or workflow changes.
  • Re-educate staff on new policies.

Common Mistakes to Avoid

  • Copy-Paste Policies – Generic templates often don’t match your specialty or state laws.
  • Inconsistent Enforcement – Selective application undermines your program.
  • Overcomplication – If your system is too cumbersome, staff will find ways around it.

Benefits of a Well-Built Program

  • Protects your license and reputation.
  • Improves patient safety and outcomes.
  • Reduces stress during audits.
  • Creates a culture of accountability and professionalism.

Final Thoughts: Build It to Last

A compliance program isn’t just paperwork—it’s a living system that should evolve with your practice and the regulatory environment.

The goal is not just to avoid penalties, but to create a safe, ethical, and efficient framework for patient care.

The best compliance program is one that’s so well-integrated, it feels like part of the fabric of the practice.


About the Author

Douglas J. Jorgensen, DO, CPC, FAAO, FACOFP

Dr. Doug is a physician, consultant, and national educator on healthcare compliance, controlled substance policy development, and practice management. He helps organizations build compliance programs that stand up to regulatory scrutiny and support excellent patient care.

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